User Tools

Site Tools


workshop:2013:software

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
Next revision
Previous revision
workshop:2013:software [2013/03/04 09:35]
lessem
workshop:2013:software [2013/03/08 10:34] (current)
lessem
Line 2: Line 2:
   * PLINK http://pngu.mgh.harvard.edu/~purcell/plink/   * PLINK http://pngu.mgh.harvard.edu/~purcell/plink/
   * PLINK/SEQ http://atgu.mgh.harvard.edu/plinkseq/   * PLINK/SEQ http://atgu.mgh.harvard.edu/plinkseq/
-  * minimac http://genome.sph.umich.edu/wiki/Minimac 
-  * mach http://genome.sph.umich.edu/wiki/MaCH 
   * Haploview http://www.broadinstitute.org/scientific-community/science/programs/medical-and-population-genetics/haploview/haploview   * Haploview http://www.broadinstitute.org/scientific-community/science/programs/medical-and-population-genetics/haploview/haploview
   * gcta http://www.complextraitgenomics.com/software/gcta/   * gcta http://www.complextraitgenomics.com/software/gcta/
 +  * minimac http://genome.sph.umich.edu/wiki/Minimac
 +  * mach http://genome.sph.umich.edu/wiki/MaCH
   * GotCloud http://genome.sph.umich.edu/wiki/GotCloud   * GotCloud http://genome.sph.umich.edu/wiki/GotCloud
 +  * EPACTS http://genome.sph.umich.edu/wiki/EPACTS
 +  * merlin http://www.sph.umich.edu/csg/abecasis/Merlin/
 +  * qtdt http://www.sph.umich.edu/csg/abecasis/QTDT/
 +  * Rare-Metal http://genome.sph.umich.edu/wiki/Rare-Metal
 +  * Rare-Metal-Worker http://genome.sph.umich.edu/wiki/Rare-Metal-Worker
   * JAG http://ctglab.nl/software/   * JAG http://ctglab.nl/software/
   * Jamp http://ctglab.nl/software/   * Jamp http://ctglab.nl/software/
 +  * tates http://ctglab.nl/software/
   * sgene http://ibg.colorado.edu/dokuwiki/lib/exe/fetch.php?media=workshop:2009:sgene.exe   * sgene http://ibg.colorado.edu/dokuwiki/lib/exe/fetch.php?media=workshop:2009:sgene.exe
-  * KGG http://bioinfo1.hku.hk:13080/kggweb/ +  * KGG http://bioinfo.hku.hk/kggweb/ 
-  * KGGSeq http://bioinfo1.hku.hk:13080/kggweb//+  * KGGSeq http://statgenpro.psychiatry.hku.hk/kggseq/
   * pspp http://www.gnu.org/software/pspp/   * pspp http://www.gnu.org/software/pspp/
   * PennCNV http://www.openbioinformatics.org/penncnv/   * PennCNV http://www.openbioinformatics.org/penncnv/
   * xhmm http://atgu.mgh.harvard.edu/xhmm/   * xhmm http://atgu.mgh.harvard.edu/xhmm/
   * eigenstrat http://genepath.med.harvard.edu/~reich/Software.htm   * eigenstrat http://genepath.med.harvard.edu/~reich/Software.htm
 +  * BayeScan http://cmpg.unibe.ch/software/bayescan/
   * R http://cran.us.r-project.org/   * R http://cran.us.r-project.org/
     * OpenMx http://openmx.psyc.virginia.edu/     * OpenMx http://openmx.psyc.virginia.edu/
Line 23: Line 30:
     * R-sem http://cran.r-project.org/web/packages/sem/     * R-sem http://cran.r-project.org/web/packages/sem/
     * Rplinkseq http://atgu.mgh.harvard.edu/plinkseq/r-intro.shtml     * Rplinkseq http://atgu.mgh.harvard.edu/plinkseq/r-intro.shtml
 +    * Rstudio http://www.rstudio.com/
  
workshop/2013/software.1362414946.txt.gz · Last modified: 2013/03/04 09:35 by lessem