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software
workshop:2013:software
Software Used at the Workshop
PLINK
http://pngu.mgh.harvard.edu/~purcell/plink/
PLINK/SEQ
http://atgu.mgh.harvard.edu/plinkseq/
Haploview
http://www.broadinstitute.org/scientific-community/science/programs/medical-and-population-genetics/haploview/haploview
gcta
http://www.complextraitgenomics.com/software/gcta/
minimac
http://genome.sph.umich.edu/wiki/Minimac
mach
http://genome.sph.umich.edu/wiki/MaCH
GotCloud
http://genome.sph.umich.edu/wiki/GotCloud
EPACTS
http://genome.sph.umich.edu/wiki/EPACTS
merlin
http://www.sph.umich.edu/csg/abecasis/Merlin/
qtdt
http://www.sph.umich.edu/csg/abecasis/QTDT/
Rare-Metal
http://genome.sph.umich.edu/wiki/Rare-Metal
Rare-Metal-Worker
http://genome.sph.umich.edu/wiki/Rare-Metal-Worker
JAG
http://ctglab.nl/software/
Jamp
http://ctglab.nl/software/
tates
http://ctglab.nl/software/
sgene
http://ibg.colorado.edu/dokuwiki/lib/exe/fetch.php?media=workshop:2009:sgene.exe
KGG
http://bioinfo.hku.hk/kggweb/
KGGSeq
http://statgenpro.psychiatry.hku.hk/kggseq/
pspp
http://www.gnu.org/software/pspp/
PennCNV
http://www.openbioinformatics.org/penncnv/
xhmm
http://atgu.mgh.harvard.edu/xhmm/
eigenstrat
http://genepath.med.harvard.edu/~reich/Software.htm
BayeScan
http://cmpg.unibe.ch/software/bayescan/
R
http://cran.us.r-project.org/
OpenMx
http://openmx.psyc.virginia.edu/
R-MASS
http://cran.r-project.org/web/packages/MASS/index.html
R-psych
http://cran.r-project.org/web/packages/psych/
R-car
http://cran.r-project.org/web/packages/car/
R-sem
http://cran.r-project.org/web/packages/sem/
Rplinkseq
http://atgu.mgh.harvard.edu/plinkseq/r-intro.shtml
Rstudio
http://www.rstudio.com/
workshop/2013/software.txt
· Last modified: 2013/03/08 10:34 by
lessem
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