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workshop:2013:software [2013/03/04 08:43]
lessem 		workshop:2013:software [2013/03/08 10:34] (current)
lessem
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 ====== Software Used at the Workshop ====== ====== Software Used at the Workshop ======
   * PLINK http://pngu.mgh.harvard.edu/~purcell/plink/   * PLINK http://pngu.mgh.harvard.edu/~purcell/plink/
-  * minimac http://genome.sph.umich.edu/wiki/Minimac +  * PLINK/SEQ http://atgu.mgh.harvard.edu/plinkseq/
-  * mach http://genome.sph.umich.edu/wiki/MaCH+
   * Haploview http://www.broadinstitute.org/scientific-community/science/programs/medical-and-population-genetics/haploview/haploview   * Haploview http://www.broadinstitute.org/scientific-community/science/programs/medical-and-population-genetics/haploview/haploview
   * gcta http://www.complextraitgenomics.com/software/gcta/   * gcta http://www.complextraitgenomics.com/software/gcta/
 +  * minimac http://genome.sph.umich.edu/wiki/Minimac
 +  * mach http://genome.sph.umich.edu/wiki/MaCH
   * GotCloud http://genome.sph.umich.edu/wiki/GotCloud   * GotCloud http://genome.sph.umich.edu/wiki/GotCloud
-  * JAG +  * EPACTS http://genome.sph.umich.edu/wiki/EPACTS 
-  * sgene +  * merlin http://www.sph.umich.edu/csg/abecasis/Merlin/ 
-  * KGG +  * qtdt http://www.sph.umich.edu/csg/abecasis/QTDT/ 
-  * KGGSeq +  * Rare-Metal http://genome.sph.umich.edu/wiki/Rare-Metal 
-  * pspp +  * Rare-Metal-Worker http://genome.sph.umich.edu/wiki/Rare-Metal-Worker 
-  * PennCNV +  * JAG http://ctglab.nl/software/ 
-  * xhmm +  * Jamp http://ctglab.nl/software/ 
-  * eigenstrat +  * tates http://ctglab.nl/software/ 
-  * R +  * sgene http://ibg.colorado.edu/dokuwiki/lib/exe/fetch.php?media=workshop:2009:sgene.exe 
-    * OpenMx +  * KGG http://bioinfo.hku.hk/kggweb/ 
-    * R-MASS +  * KGGSeq http://statgenpro.psychiatry.hku.hk/kggseq/ 
-    * R-psych +  * pspp http://www.gnu.org/software/pspp/ 
-    * R-car +  * PennCNV http://www.openbioinformatics.org/penncnv/ 
-    * R-sem +  * xhmm http://atgu.mgh.harvard.edu/xhmm/ 
-    * Rplinkseq+  * eigenstrat http://genepath.med.harvard.edu/~reich/Software.htm 
 +  * BayeScan http://cmpg.unibe.ch/software/bayescan/ 
 +  * R http://cran.us.r-project.org/ 
 +    * OpenMx http://openmx.psyc.virginia.edu/ 
 +    * R-MASS http://cran.r-project.org/web/packages/MASS/index.html 
 +    * R-psych http://cran.r-project.org/web/packages/psych/ 
 +    * R-car http://cran.r-project.org/web/packages/car/ 
 +    * R-sem http://cran.r-project.org/web/packages/sem/ 
 +    * Rplinkseq http://atgu.mgh.harvard.edu/plinkseq/r-intro.shtml 
 +    * Rstudio http://www.rstudio.com/
  
workshop/2013/software.1362411782.txt.gz · Last modified: 2013/03/04 08:43 by lessem

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