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psyc_7102_statistical-genetics [2015/11/14 10:09] scott /* Server and file management tools */ |
psyc_7102_statistical-genetics [2015/12/02 11:51] scott /* Homework */ |
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[[homework_6_ancestry]] | [[homework_6_ancestry]] | ||
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+ | [[homework_7_functional_annotation]] | ||
======= Command Line and Other Coding Resources ======= | ======= Command Line and Other Coding Resources ======= | ||
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+ | |||
+ | ====== Command Line ====== | ||
[[https:// | [[https:// | ||
[[https:// | [[https:// | ||
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+ | |||
+ | ====== Regular Expressions (Regex) ====== | ||
+ | |||
+ | [[http:// | ||
+ | |||
+ | [[http:// | ||
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ls -lhrt ### list the contents of a directory sorted from oldest to newest | ls -lhrt ### list the contents of a directory sorted from oldest to newest | ||
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+ | ### Is your command taking a very long time and you can't keep your computer open for hours? | ||
+ | ### Just prepend your command with ' | ||
+ | ### This will prevent the system from killing your job when your computer disconnects from | ||
+ | ### the server. | ||
+ | ### Here are a few toy examples | ||
+ | nohup plink --vcf myvcf.vcf.gz --maf .05 & # Run plink | ||
+ | nohup zgrep -v '#' | ||
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- | ssh < | + | ssh < |
- | ### Lessem | + | ### |
ssh < | ssh < | ||