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df -h ### Show space availability in all directories df -h /directory ### Show disk space in /directory top ### Show resource utilization and job status, etc. htop ### Souped-up "top" ls -lhrt ### list the contents of a directory sorted from oldest to newest
ssh <uniquename>@statgen.colorado.edu ### log into statgen a server at IBG (ask Jeff ### Lessem for an account if you don't already have one). ssh <uniquename>@vieques.colorado.edu ### Once on statgen, then log into vieques from statgen.
### PBS batch system utilities qstat ### On PBS batch system shows status of submitted jobs watch qstat ### Refreshes “qstat” every second.
### Submit interactive pbs job in the short queue for 23 hours on 1 node with 22 CPUs ### Having 22 or 23 CPUs is helpful when you're running per-chromosome jobs. qsub -I -q short -l walltime=23:00:00 -l nodes=1:ppn=22
qdel <job number> ### Kill a PBS job qdel all ### Kill all your PBS jobs