minnesota_twin_family_study
For sequences from UMICH sequencing core. Example Makefile for converting fastq's for 1 sample to a single recalibrated deduped bam file:
/net/twins/svrieze/vrieze-pipeline/demux/Pool_18158/intermediateFiles/S001/Makefile
For first set of 300ish sequences from HudsonAlpha core. Example Makefile for converting bam to fastq back to bam.
/net/twins/svrieze/BRIDGES-samples-bams/bwa-mem-conversion/1497-RMM-1540.makefile
For second set of 180ish sequences from HudsonAlpha core. Example Makefile for converting bam to fastq back to bam. /net/twins/svrieze/BRIDGES-samples-bams/bwa-mem-conversion/1497-RMM-1540.makefile
minnesota_twin_family_study.txt · Last modified: 2016/03/16 09:59 by scott
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