IBG Wiki - uk_biobank

downloading_the_data

anonymous@undisclosed.example.com (Anonymous) — Wed, 22 Apr 2020 17:35:14 +0000

These procedures were all derived from the documentation at the UK Biobank. This information is here as a record and reference. Researchers should not have to repeat these steps. Phenotypic data * The phenotype file was downloaded from UK Biobank by the project PI as instructed in the data accessibility email.

file_locations

anonymous@undisclosed.example.com (Anonymous) — Mon, 29 Feb 2016 18:29:01 +0000

The files are on RC in /work/KellerLab/UKBiobank The phenotypes are in an Rdata file that can be read in with a line such as load(file=“/work/KellerLab/UKBiobank/phenotypes/uk1653.Rdata”) The data is all in an object called “bd”. The raw genetic data is under the directory

phenotype_request

anonymous@undisclosed.example.com (Anonymous) — Fri, 10 Jun 2016 04:35:03 +0000

If you would like to request new variables for an analysis on UK Biobank you are planning, please fill in the information below. Please note the following: 1. You will need to go to the main UK Biobank phenotype webpage () to find the relevant information.

phenotypes

anonymous@undisclosed.example.com (Anonymous) — Tue, 07 Jun 2016 15:59:44 +0000

* Here is an html file containing documentation of the variables in our UK Biobank dataset (ukb6395) * The second set of UK Biobank data (ukb7241) is documented here * Flowcharts showing the routing logic for the UK Biobank alcohol and tobacco questions. Code here: Instance 0 (Initial Assessment): 2006-2010

publication_feed

anonymous@undisclosed.example.com (Anonymous) — Tue, 05 Apr 2016 17:32:24 +0000