IBG Wiki

bg_ii_spring_2016

anonymous@undisclosed.example.com (Anonymous) — Thu, 05 Jan 2017 00:18:09 +0000

Time & Place Class meets on Tuesdays and Thursdays from 3-4:15pm in E417 Muenzinger Syllabus Please find the Spring 2016 Syllabus here. Lectures and Readings The lecture handouts and readings are located in our class Google Drive folder organized by the week in which they're assigned.

co_twins

anonymous@undisclosed.example.com (Anonymous) — Tue, 23 Aug 2016 20:28:16 +0000

Meeting minutes Meeting minutes. Software development tracking We use agile software development principles and track our progress on Bug reports Bug reports from the Colorado team live in this google doc. Only a few people have permissions to view it. EF Data Analysis EF Data has been coded and analyzed through August 17th, 2016 (577 Subjects) by Daniel Gustavson. The EF task scripts, data, and most recent upload, can be found on the delta server (delt…

downloading_the_data

anonymous@undisclosed.example.com (Anonymous) — Tue, 23 Feb 2016 18:11:58 +0000

* REDIRECT downloading_the_data

final_exam

anonymous@undisclosed.example.com (Anonymous) — Tue, 08 Dec 2015 17:07:05 +0000

Instructions PSYC 7102 -- Statistical Genetics. Final Exam Due: December 17 2015 @ 5pm. There are 5 questions, each worth 8 points, for a total of 40 possible points. The exam is “open book”. Use whatever online sources are helpful to you. All questions contain multiple parts

homework_6_ancestry

anonymous@undisclosed.example.com (Anonymous) — Mon, 16 Nov 2015 17:18:33 +0000

Notes Code for Homework # PSYC 7102 -- Statistical Genetics # Homework #6: Ancestry # Due: November 25th # PLEASE CONTACT DAVID TO GET YOUR NEW VCF. # Overview: Using your variant calls contained in your VCF files, # combined with the existing 1000 Genomes variant calls from the 1000 # Genomes project, you will conduct a principal components analysis # of the 1000 Genomes samples using PLINK and estimate your position in # the 1000G PCA space

homework_7_functional_annotation

anonymous@undisclosed.example.com (Anonymous) — Thu, 03 Dec 2015 21:22:44 +0000

Notes Code for Homework # PSYC 7102 -- Statistical Genetics # Homework #7: Functional Annotation # Due: December 10th # Overview: In this homework I ask you to annotate genes in your genome # and interpret the consequences of a few annotations. # Try not to frequently run commands on the head node, use an interactive # session by running the following command: qsub -I -l walltime=23:00:00 -q short -l mem=2gb -l nodes=1:ppn=2

lab_1

anonymous@undisclosed.example.com (Anonymous) — Tue, 25 Apr 2017 16:49:01 +0000

Genotype file The genotype file is located here: Lab 1 Assignment ### Lab 1 assignment ### Assigned: 4/13/2017 ### Due: 4/20/2017 at the beginning of class. Late assignments (even by 5 minutes) ### will not be accepted! ### ### Note: all questions should be answered with respect to the ### genotypes from hu916767_20170324191934.txt

lab_2

anonymous@undisclosed.example.com (Anonymous) — Tue, 02 May 2017 15:09:51 +0000

Genotype file An updated genotype file is here: To understand the annotation, read this: If you're using Safari on a Mac you will need to do the following before downloading the file: * Open Safari * Click the “General” tab * Uncheck the box

minnesota_twin_family_study

anonymous@undisclosed.example.com (Anonymous) — Wed, 16 Mar 2016 15:59:18 +0000

For sequences from UMICH sequencing core. Example Makefile for converting fastq's for 1 sample to a single recalibrated deduped bam file: /net/twins/svrieze/vrieze-pipeline/demux/Pool_18158/intermediateFiles/S001/Makefile For first set of 300ish sequences from HudsonAlpha core. Example Makefile for converting bam to fastq back to bam.

navbar

anonymous@undisclosed.example.com (Anonymous) — Wed, 06 Dec 2017 20:35:21 +0000

* IBG Home * Computing * IBG Data Access * CADD & GADD * LTS Data * CAP * CATSLife * ERDS * Twin Workshop

psyc_3102_behavioral_genetics

anonymous@undisclosed.example.com (Anonymous) — Tue, 18 Apr 2017 15:58:34 +0000

Spring 2017 News No news yet! Time & Place Class meets on Tuesdays and Thursdays from 3:30-4:45pm in E064 Muenzinger Syllabus Please find the Spring 2017 Syllabus here. Lecture handouts and readings are linked in the syllabus document. Handouts & Readings After I finish all the slides on each module I will post handouts of the slides in the google drive folder. This same drive folder also contains all the readings for the course.

psyc_3112_behavioral_genetics_ii

anonymous@undisclosed.example.com (Anonymous) — Sat, 09 Jan 2016 05:39:11 +0000

Spring 2016 bg_ii_spring_2016 Spring 2015

psyc_7102_statistical-genetics

anonymous@undisclosed.example.com (Anonymous) — Tue, 08 Dec 2015 03:43:22 +0000

Homework homework_6_ancestry homework_7_functional_annotation Final Exam final_exam Command Line and Other Coding Resources Command Line Code Academy Coursera Regular Expressions (Regex) Regex Cheat Sheet Regex Tutorial Code Samples (Please add!) Server and file management tools df -h ### Show space availability in all directories df -h /directory ### Show disk space in /directory top ### Show resource utilization and job status, etc. htop …

psyc_7693_personality_measurement._spring_2016

anonymous@undisclosed.example.com (Anonymous) — Thu, 21 Jan 2016 23:08:04 +0000

Syllabus Here is a link to the Readings The readings are all located in this Google Drive folder. Please let Scott know if you have any trouble finding any.

psyc_7693_personality_measurement

anonymous@undisclosed.example.com (Anonymous) — Thu, 14 Apr 2016 05:09:43 +0000

Spring 2016 Syllabus Here is a link to the Readings * Readings are all located in this Google Drive folder. Please let Scott know if you have any trouble finding any. * on Base Rates & Bayes' Theorem. source}}. for the cutting score demo. * on clinstix.

start

anonymous@undisclosed.example.com (Anonymous) — Thu, 08 May 2025 14:39:39 +0000

IBG Website Links * IBG Home * International Statistical Genetics Workshop * IBG Internal Documentation IBG Data Access and Resources * IBG Data Access Home Page (New Users Start Here!) * Projects in Progress and Abstract Submission * Publication Library (under construction) * IBG Grant Numbers Resource IBG Project Pages * CADD & GADD Center * CATSLife * COMN & COMN Paths (under construction) * COTwins * LTS * CAP * ERDS * Keller and Evans Lab

templates

anonymous@undisclosed.example.com (Anonymous) — Thu, 09 Jun 2016 02:28:12 +0000

topbar

anonymous@undisclosed.example.com (Anonymous) — Mon, 13 Mar 2017 18:23:00 +0000

* IBG Home * Computing * Twin Workshop * IBG Data Access * CADD & GADD * LTS Data * CAP * CATSLife * ERDS

ukbiobank

anonymous@undisclosed.example.com (Anonymous) — Tue, 23 Feb 2016 18:04:48 +0000