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workshop:2017:software [2017/03/06 08:46] lessem |
workshop:2017:software [2017/03/09 12:19] (current) lessem |
- [[https://cran.r-project.org/|R]] | - [[https://cran.r-project.org/|R]] |
- [[https://www.rstudio.com/|RStudio]] | - [[https://www.rstudio.com/|RStudio]] |
| - [[https://cran.r-project.org/web/packages/gee/index.html|Gee]] |
| - [[http://www.uni-regensburg.de/medizin/epidemiologie-praeventivmedizin/genetische-epidemiologie/software/index.html|EasyQC]] |
| - [[https://www.cog-genomics.org/plink2|plink]] |
| - [[http://zzz.bwh.harvard.edu/plink/|plink (the old show)]] |
| - [[https://wp.sanger.ac.uk/barrettgroup/tag/evoker/|Evoker]] |
| - [[https://www.broadinstitute.org/haploview/haploview|Haploview]] |
| - [[http://genome.sph.umich.edu/wiki/Minimac|minimac]] |
| - [[http://genome.sph.umich.edu/wiki/RAREMETALWORKER|RAREMETALWORKER]] |
| - [[http://genome.sph.umich.edu/wiki/Metal|Metal]] |
| - [[https://www.hsph.harvard.edu/alkes-price/eigensoft-frequently-asked-questions/|Eigensoft suite]] |
| - [[http://cnsgenomics.com/software/gcta/|gcta]] |
| - [[http://fuma.ctglab.nl/|Functional Mapping and Annotation of Genome-Wide Association Studies]] |
| - [[https://ctg.cncr.nl/software/magma|MAGMA]] |
| - [[http://uswest.ensembl.org/info/docs/tools/vep/index.html|Variant Effect Predictor]] |
| - [[http://exac.broadinstitute.org/|ExAC Browser]] |
| - [[http://www.ensembl.org/Homo_sapiens/|Ensembl]] |
| - [[https://hail.is/|Hail]] |