User Tools

Site Tools


workshop:2015:cdrom

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
Next revision
Previous revision
workshop:2015:cdrom [2015/03/09 12:06]
lessem [Faculty Files]
workshop:2015:cdrom [2015/03/30 13:47] (current)
lessem [Software]
Line 1: Line 1:
 ===== Software ====== ===== Software ======
-Links to software used at the course.+Links to software used at the course.  
 +  * [[https://www.cog-genomics.org/plink2/|plink version 1.9x]] or [[http://pngu.mgh.harvard.edu/~purcell/plink/|the old version 1.07]] 
 +  * [[http://csg.sph.umich.edu/abecasis/MACH/|mach]] 
 +  * [[http://csg.sph.umich.edu/abecasis/Metal/index.html|Metal]] 
 +  * [[http://csg.sph.umich.edu/locuszoom/|LocusZoom]] 
 +  * [[http://ctglab.nl/software/jag|JAG]] 
 +  * [[http://ctglab.nl/software/jamp|JAMP]] 
 +  * [[http://ctglab.nl/software/tates|TATES]] 
 +  * [[https://atgu.mgh.harvard.edu/plinkseq/index.shtml|PSEQ]] 
 +  * [[http://genome.sph.umich.edu/wiki/Minimac|Minimac]] 
 +  * [[http://statgenpro.psychiatry.hku.hk/limx/kgg/|KGG]] 
 +  * [[http://statgenpro.psychiatry.hku.hk/limx/kggseq/|KGGSeq]] 
 +  * [[http://openmx.psyc.virginia.edu/|OpenMx]] 
 +  * [[http://www.openbioinformatics.org/annovar/|ANNOVAR]] 
 +  * [[http://www.complextraitgenomics.com/software/gcta/|GCTA]] 
 +  * [[http://ctglab.nl/software/magma|MAGMA]]
 ===== Faculty Files ===== ===== Faculty Files =====
  These are the files the faculty used during the course. Both slides from presentations and examples from practicals are included. Completion of the practicals will require obtaining the appropriate software.  These are the files the faculty used during the course. Both slides from presentations and examples from practicals are included. Completion of the practicals will require obtaining the appropriate software.
Line 9: Line 24:
   * [[http://ibg.colorado.edu/cdrom2015/beata/|Beata St. Pourcain]]   * [[http://ibg.colorado.edu/cdrom2015/beata/|Beata St. Pourcain]]
   * [[http://ibg.colorado.edu/cdrom2015/boomsma/|Dorret Boomsma]]   * [[http://ibg.colorado.edu/cdrom2015/boomsma/|Dorret Boomsma]]
 +  * [[http://ibg.colorado.edu/cdrom2015/de Leeuw/|Christiaan de Leeuw]]
   * [[http://ibg.colorado.edu/cdrom2015/eaves/|Lindon Eaves]]   * [[http://ibg.colorado.edu/cdrom2015/eaves/|Lindon Eaves]]
   * [[http://ibg.colorado.edu/cdrom2015/evans/|David Evans]]   * [[http://ibg.colorado.edu/cdrom2015/evans/|David Evans]]
Line 17: Line 33:
   * [[http://ibg.colorado.edu/cdrom2015/kirkpatrick/|Rob Kirkpatrick]]   * [[http://ibg.colorado.edu/cdrom2015/kirkpatrick/|Rob Kirkpatrick]]
   * [[http://ibg.colorado.edu/cdrom2015/lek/|Monkol Lek]]   * [[http://ibg.colorado.edu/cdrom2015/lek/|Monkol Lek]]
 +  * [[http://ibg.colorado.edu/cdrom2015/li/|Miaoxin Li]]
   * [[http://ibg.colorado.edu/cdrom2015/martin/|Nick Martin]]   * [[http://ibg.colorado.edu/cdrom2015/martin/|Nick Martin]]
   * [[http://ibg.colorado.edu/cdrom2015/medland/|Sarah Medland]]   * [[http://ibg.colorado.edu/cdrom2015/medland/|Sarah Medland]]
Line 26: Line 43:
   * [[http://ibg.colorado.edu/cdrom2015/sunyaev/|Shamil Sunyaev]]   * [[http://ibg.colorado.edu/cdrom2015/sunyaev/|Shamil Sunyaev]]
   * [[http://ibg.colorado.edu/cdrom2015/tang/|Clara Tang]]   * [[http://ibg.colorado.edu/cdrom2015/tang/|Clara Tang]]
 +
 +[[http://ibg.colorado.edu/cdrom2015/workshop2015.zip|Omnibus zip file]] containing all of the faculty files (573 megabytes).
workshop/2015/cdrom.1425924380.txt.gz · Last modified: 2015/03/09 12:06 by lessem