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workshop:2015:cdrom [2015/03/09 12:04] lessem created |
workshop:2015:cdrom [2015/03/30 13:47] (current) lessem [Software] |
| ===== Software ====== |
| Links to software used at the course. |
| * [[https://www.cog-genomics.org/plink2/|plink version 1.9x]] or [[http://pngu.mgh.harvard.edu/~purcell/plink/|the old version 1.07]] |
| * [[http://csg.sph.umich.edu/abecasis/MACH/|mach]] |
| * [[http://csg.sph.umich.edu/abecasis/Metal/index.html|Metal]] |
| * [[http://csg.sph.umich.edu/locuszoom/|LocusZoom]] |
| * [[http://ctglab.nl/software/jag|JAG]] |
| * [[http://ctglab.nl/software/jamp|JAMP]] |
| * [[http://ctglab.nl/software/tates|TATES]] |
| * [[https://atgu.mgh.harvard.edu/plinkseq/index.shtml|PSEQ]] |
| * [[http://genome.sph.umich.edu/wiki/Minimac|Minimac]] |
| * [[http://statgenpro.psychiatry.hku.hk/limx/kgg/|KGG]] |
| * [[http://statgenpro.psychiatry.hku.hk/limx/kggseq/|KGGSeq]] |
| * [[http://openmx.psyc.virginia.edu/|OpenMx]] |
| * [[http://www.openbioinformatics.org/annovar/|ANNOVAR]] |
| * [[http://www.complextraitgenomics.com/software/gcta/|GCTA]] |
| * [[http://ctglab.nl/software/magma|MAGMA]] |
===== Faculty Files ===== | ===== Faculty Files ===== |
These are the files the faculty used during the course. Both slides from presentations and examples from practicals are included. Completion of the practicals will require obtaining the appropriate software. | These are the files the faculty used during the course. Both slides from presentations and examples from practicals are included. Completion of the practicals will require obtaining the appropriate software. |
* [[http://ibg.colorado.edu/cdrom2015/beata/|Beata St. Pourcain]] | * [[http://ibg.colorado.edu/cdrom2015/beata/|Beata St. Pourcain]] |
* [[http://ibg.colorado.edu/cdrom2015/boomsma/|Dorret Boomsma]] | * [[http://ibg.colorado.edu/cdrom2015/boomsma/|Dorret Boomsma]] |
| * [[http://ibg.colorado.edu/cdrom2015/de Leeuw/|Christiaan de Leeuw]] |
* [[http://ibg.colorado.edu/cdrom2015/eaves/|Lindon Eaves]] | * [[http://ibg.colorado.edu/cdrom2015/eaves/|Lindon Eaves]] |
* [[http://ibg.colorado.edu/cdrom2015/evans/|David Evans]] | * [[http://ibg.colorado.edu/cdrom2015/evans/|David Evans]] |
* [[http://ibg.colorado.edu/cdrom2015/kirkpatrick/|Rob Kirkpatrick]] | * [[http://ibg.colorado.edu/cdrom2015/kirkpatrick/|Rob Kirkpatrick]] |
* [[http://ibg.colorado.edu/cdrom2015/lek/|Monkol Lek]] | * [[http://ibg.colorado.edu/cdrom2015/lek/|Monkol Lek]] |
* [[http://ibg.colorado.edu/cdrom2015/maes/|Hermine Maes]] | * [[http://ibg.colorado.edu/cdrom2015/li/|Miaoxin Li]] |
* [[http://ibg.colorado.edu/cdrom2015/martin/|Nick Martin]] | * [[http://ibg.colorado.edu/cdrom2015/martin/|Nick Martin]] |
* [[http://ibg.colorado.edu/cdrom2015/medland/|Sarah Medland]] | * [[http://ibg.colorado.edu/cdrom2015/medland/|Sarah Medland]] |
* [[http://ibg.colorado.edu/cdrom2015/sunyaev/|Shamil Sunyaev]] | * [[http://ibg.colorado.edu/cdrom2015/sunyaev/|Shamil Sunyaev]] |
* [[http://ibg.colorado.edu/cdrom2015/tang/|Clara Tang]] | * [[http://ibg.colorado.edu/cdrom2015/tang/|Clara Tang]] |
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| [[http://ibg.colorado.edu/cdrom2015/workshop2015.zip|Omnibus zip file]] containing all of the faculty files (573 megabytes). |