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workshop:2013:software [2013/03/04 15:57]
lessem 		workshop:2013:software [2013/03/06 15:07]
lessem
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   * PLINK http://pngu.mgh.harvard.edu/~purcell/plink/   * PLINK http://pngu.mgh.harvard.edu/~purcell/plink/
   * PLINK/SEQ http://atgu.mgh.harvard.edu/plinkseq/   * PLINK/SEQ http://atgu.mgh.harvard.edu/plinkseq/
-  * minimac http://genome.sph.umich.edu/wiki/Minimac 
-  * mach http://genome.sph.umich.edu/wiki/MaCH 
   * Haploview http://www.broadinstitute.org/scientific-community/science/programs/medical-and-population-genetics/haploview/haploview   * Haploview http://www.broadinstitute.org/scientific-community/science/programs/medical-and-population-genetics/haploview/haploview
   * gcta http://www.complextraitgenomics.com/software/gcta/   * gcta http://www.complextraitgenomics.com/software/gcta/
 +  * minimac http://genome.sph.umich.edu/wiki/Minimac
 +  * mach http://genome.sph.umich.edu/wiki/MaCH
   * GotCloud http://genome.sph.umich.edu/wiki/GotCloud   * GotCloud http://genome.sph.umich.edu/wiki/GotCloud
 +  * EPACTS http://genome.sph.umich.edu/wiki/EPACTS
 +  * merlin http://www.sph.umich.edu/csg/abecasis/Merlin/
 +  * qtdt http://www.sph.umich.edu/csg/abecasis/QTDT/
   * JAG http://ctglab.nl/software/   * JAG http://ctglab.nl/software/
   * Jamp http://ctglab.nl/software/   * Jamp http://ctglab.nl/software/
 +  * tates http://ctglab.nl/software/
   * sgene http://ibg.colorado.edu/dokuwiki/lib/exe/fetch.php?media=workshop:2009:sgene.exe   * sgene http://ibg.colorado.edu/dokuwiki/lib/exe/fetch.php?media=workshop:2009:sgene.exe
-  * KGG http://bioinfo1.hku.hk:13080/kggweb/ +  * KGG http://bioinfo.hku.hk/kggweb/ 
-  * KGGSeq http://bioinfo1.hku.hk:13080/kggweb//+  * KGGSeq http://statgenpro.psychiatry.hku.hk/kggseq/
   * pspp http://www.gnu.org/software/pspp/   * pspp http://www.gnu.org/software/pspp/
   * PennCNV http://www.openbioinformatics.org/penncnv/   * PennCNV http://www.openbioinformatics.org/penncnv/
   * xhmm http://atgu.mgh.harvard.edu/xhmm/   * xhmm http://atgu.mgh.harvard.edu/xhmm/
   * eigenstrat http://genepath.med.harvard.edu/~reich/Software.htm   * eigenstrat http://genepath.med.harvard.edu/~reich/Software.htm
 +  * BayeScan http://cmpg.unibe.ch/software/bayescan/
   * R http://cran.us.r-project.org/   * R http://cran.us.r-project.org/
     * OpenMx http://openmx.psyc.virginia.edu/     * OpenMx http://openmx.psyc.virginia.edu/
workshop/2013/software.txt · Last modified: 2013/03/08 10:34 by lessem

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