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--- psyc_7102_statistical-genetics [2015/11/14 10:29]
scott /* Logging into vieques from home without using VPN */
+++ psyc_7102_statistical-genetics [2015/12/02 11:51]
scott /* Homework */
@@ Line 3: / Line 3: @@
 [[homework_6_ancestry]]
+[[homework_7_functional_annotation]]
 ======= Command Line and Other Coding Resources =======
+====== Command Line ======
 [[https://www.codecademy.com/learn/learn-the-command-line|Code Academy]]
 [[https://www.coursera.org/course/gencommand|Coursera]]
+====== Regular Expressions (Regex) ======
+[[http://networking.ringofsaturn.com/Web/regular-expressions-cheat-sheet-v2.pdf|Regex Cheat Sheet]]
+[[http://www.zytrax.com/tech/web/regex.htm|Regex Tutorial]]
@@ Line 25: / Line 37: @@
    ls -lhrt       ### list the contents of a directory sorted from oldest to newest
+   ### Is your command taking a very long time and you can't keep your computer open for hours?
+   ### Just prepend your command with 'nohup' and append it with '&'.
+   ### This will prevent the system from killing your job when your computer disconnects from
+   ### the server.
+   ### Here are a few toy examples
+   nohup plink --vcf myvcf.vcf.gz --maf .05 &  # Run plink
+   nohup zgrep -v '#' myvcf.vcf.gz | bgzip -c > newVcfMinusHeader.vcf.gz &

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