This shows you the differences between two versions of the page.
Both sides previous revision Previous revision Next revision | Previous revision Last revision Both sides next revision | ||
psyc_7102_statistical-genetics [2015/11/13 20:53] scott /* Code Samples (Please add!) */ |
psyc_7102_statistical-genetics [2015/12/02 11:51] scott /* Homework */ |
||
---|---|---|---|
Line 3: | Line 3: | ||
[[homework_6_ancestry]] | [[homework_6_ancestry]] | ||
+ | |||
+ | [[homework_7_functional_annotation]] | ||
======= Command Line and Other Coding Resources ======= | ======= Command Line and Other Coding Resources ======= | ||
+ | |||
+ | |||
+ | ====== Command Line ====== | ||
[[https:// | [[https:// | ||
[[https:// | [[https:// | ||
+ | |||
+ | |||
+ | ====== Regular Expressions (Regex) ====== | ||
+ | |||
+ | [[http:// | ||
+ | |||
+ | [[http:// | ||
Line 15: | Line 27: | ||
- | ====== Server management tools ====== | + | ====== Server |
| | ||
- | df -h ### Show space availability in all directories | + | df -h |
- | df -h / | + | df -h / |
+ | |||
+ | | ||
+ | | ||
+ | |||
+ | ls -lhrt ### list the contents of a directory sorted from oldest to newest | ||
- | top | + | ### |
- | htop ### Souped-up " | + | ### Just prepend your command with ' |
+ | ### This will prevent the system from killing your job when your computer disconnects from | ||
+ | ### the server. | ||
+ | ### | ||
+ | nohup plink --vcf myvcf.vcf.gz --maf .05 & # Run plink | ||
+ | nohup zgrep -v '#' | ||
Line 29: | Line 51: | ||
| | ||
- | ssh < | + | ssh < |
- | ### Lessem | + | ### |
ssh < | ssh < | ||