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minnesota_twin_family_study [2016/03/05 22:38]
scott /* Structural variant calling */
minnesota_twin_family_study [2016/03/16 09:59] (current)
scott
Line 1: Line 1:
 +For sequences from UMICH sequencing core. Example Makefile for converting fastq's for 1 sample to a single recalibrated deduped bam file:
 +  /net/twins/svrieze/vrieze-pipeline/demux/Pool_18158/intermediateFiles/S001/Makefile
 +
 +For first set of 300ish sequences from HudsonAlpha core. Example Makefile for converting bam to fastq back to bam.
 +  /net/twins/svrieze/BRIDGES-samples-bams/bwa-mem-conversion/1497-RMM-1540.makefile
 +
 +For second set of 180ish sequences from HudsonAlpha core. Example Makefile for converting bam to fastq back to bam.
 + /net/twins/svrieze/BRIDGES-samples-bams/bwa-mem-conversion/1497-RMM-1540.makefile
  
minnesota_twin_family_study.1457242735.txt.gz ยท Last modified: 2016/03/05 22:38 by scott