lab_1
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lab_1 [2017/04/13 13:43] scott /* Example commands */ |
lab_1 [2017/04/25 10:49] (current) scott /* Lab 1 Assignment */ |
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| ### Question 1 (4 points) | ### Question 1 (4 points) | ||
| ### a) What does " | ### a) What does " | ||
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| ### Question 2 (2 points) | ### Question 2 (2 points) | ||
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| ### the website | ### the website | ||
| + | |||
| + | Example full credit answers: | ||
| + | - Question 1 | ||
| + | - "The positive strand refers to the leading strand of DNA being sequenced (eg. the strand that RNA would be replicated against)." | ||
| + | - "Each DNA strand is a double helix - it has two strands. The first strand given is the postive strand; the second strand is based on the first and is called the negative strand. For example, if the positive strand is ATCGG, then the negative strand is TAGCC (T always pairs with A, and G always pairs with C). The header is stating that the genome provided is only based on the first strand (the positive strand)." | ||
| + | - Question 2 | ||
| + | - awk ' | ||
| + | - cut -f2 hu916767_20170324191934.txt | ||
| + | - Question 3 | ||
| + | - awk ' | ||
| + | - cut -f2 hu916767_20170324191934.txt | sort -u | ||
| + | - The command extracts the second column from a tab-delimited file, alphanumerically sorts it, and removes all duplicate lines. | ||
| + | - Question 4 | ||
| + | - grep ' | ||
| + | - Output: rs671 12 112241766 GG | ||
| + | - " | ||
| + | - Question 5 | ||
| + | - Minor allele is A in individuals of European ancestry and MAF is .36 | ||
| + | - In individuals of African ancestry MAF is .021 | ||
| + | - The SNP is associated with thinking cilantro tastes like soap | ||
| + | - "The minor allele is most common in central/ | ||
lab_1.1492112635.txt.gz ยท Last modified: 2017/04/13 13:43 by scott
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