lab_1
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lab_1 [2017/04/13 13:27] scott /* Lab 1 Assignment */ |
lab_1 [2017/04/13 13:43] scott /* Example commands */ |
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| ### We can also grab both variants, if we wanted to | ### We can also grab both variants, if we wanted to | ||
| grep -E ' | grep -E ' | ||
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| + | ### What if we have a variant where we don't know the rsID, | ||
| + | ### but only the chromosome, position, genome build, and alleles? | ||
| + | ### Well, to get chromosome 1, position 11850759, we can do this: | ||
| + | grep -E ' | ||
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| grep -E ' | grep -E ' | ||
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| + | ====== Useful databases ====== | ||
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| + | **Geography of Genetic Variants Browser** Interactively browse geographic distribution of genetic variants. Can compare to 1000 Genomes, ExAC, and POPRES (Euro-centric). http:// | ||
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| + | **dbSNP** A fairly exhaustive database of SNPs in humans. https:// | ||
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| + | **ExAC** A good source for exonic variants. Very user friendly. http:// | ||
lab_1.txt · Last modified: 2017/04/25 10:49 by scott
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