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keller_and_evans_lab:gscan [2016/10/24 16:25]
scott 		keller_and_evans_lab:gscan [2019/10/28 15:59]
lessem ↷ Page moved from gscan to keller_and_evans_lab:gscan
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 ======= GSCAN GWAS ======= ======= GSCAN GWAS =======
 +
 +
 +====== Workgroups ======
 +
 +  * **Phenotype workgroup:** Laura Bierut, Marilyn Cornelis, Dave Hinds, Youna Hu, Jaakko Kaprio, Eric Jorgenson, Dajiang Liu, Matt McGue, Marcus Munafo, Gunter Schumann, Scott Vrieze, Luisa Zuccolo
 +  * **Analysis workgroup:** Goncalo Abecasis, David Hinds, Youna Hu, Eric Jorgenson, Charles Kooperberg, Pete Kraft, Penelope Lind, Dajiang Liu, Nancy Saccone, Dan Stram, Scott Vrieze, Xiaowei Zhan
  
  
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 ====== TOPMed ====== ====== TOPMed ======
 +
 +We hope to update this section with detailed descriptions of how we have conducted phenotype derivations for each TOPMed cohort to which we have access to raw data. 
 +
 +  *  For now, the R scripts to go from source phenotype file to eventual derived phenotype is located here:
 +  /net/twins/svrieze/everything-else/wp/GSCAN/TOPMed/README
 +
 +  *  We're tracking analyses in [[https://docs.google.com/document/d/1HtJY6DzPWqr2XGTAD8HzoiIUoC45nSj116neRb3do3s/edit|**this Google doc**]]
  
  
-===== Phenotype definitions and analysis plan =====+===== Phenotype definitions and analysis plan for external studies =====
  
 Phenotype definitions and analysis plans for the TOPMed studies are {{file_topmed_smoking_analysis_plan-v0_2.docxcontained in this document}}. Phenotype definitions and analysis plans for the TOPMed studies are {{file_topmed_smoking_analysis_plan-v0_2.docxcontained in this document}}.
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-While authorship is decided on an individual basis for each paper (depending on contribution), typically, authorship is arranged in groups. We hope the GIANT investigators will forgive us for adopting their authorship guidelines. +While authorship is decided on an individual basis for each GSCAN paper, typically, authorship is arranged in groups. We hope the GIANT investigators will forgive us for adopting their authorship guidelines. 
  
   *  A group of 6 or fewer junior investigators who strongly led the efforts, usually starred to denote equal contribution, followed by additional junior investigators who played key, central roles.   *  A group of 6 or fewer junior investigators who strongly led the efforts, usually starred to denote equal contribution, followed by additional junior investigators who played key, central roles.
keller_and_evans_lab/gscan.txt · Last modified: 2019/10/28 15:59 by lessem

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