This shows you the differences between two versions of the page.
Both sides previous revision Previous revision | |||
catslife:instruments:polygenic_scores_pgss [2024/04/11 14:54] gustavsd [Polygenic Scores Currently Available] |
catslife:instruments:polygenic_scores_pgss [2024/04/11 14:55] gustavsd [Information About the PGS Pipeline] |
||
---|---|---|---|
Line 10: | Line 10: | ||
We started with the lightly QC'd genetic datafiles from Luke Evans that was imputed to HRC. Additional QC was then applied to remove INFO/ | We started with the lightly QC'd genetic datafiles from Luke Evans that was imputed to HRC. Additional QC was then applied to remove INFO/ | ||
- | PGSs were then computed using PRScs (CITE) and/or SbayesR (CITE) programs. See the table below for which specific traits have been scored. Example scripts for generating your own scores are provided on RC, but please contact Daniel Gustavson if you have any questions and/or want to request specific scores generated in the future. | + | PGSs were then computed using PRScs (Ge et al., 2019) and/or SbayesR (Lloyd-Jones et al., 2019) software. See the table below for which specific traits have been scored. Example scripts for generating your own scores are provided on RC, but please contact Daniel Gustavson if you have any questions and/or want to request specific scores generated in the future. |