====== Software Used at the Workshop ====== * PLINK http://pngu.mgh.harvard.edu/~purcell/plink/ * PLINK/SEQ http://atgu.mgh.harvard.edu/plinkseq/ * Haploview http://www.broadinstitute.org/scientific-community/science/programs/medical-and-population-genetics/haploview/haploview * gcta http://www.complextraitgenomics.com/software/gcta/ * minimac http://genome.sph.umich.edu/wiki/Minimac * mach http://genome.sph.umich.edu/wiki/MaCH * GotCloud http://genome.sph.umich.edu/wiki/GotCloud * EPACTS http://genome.sph.umich.edu/wiki/EPACTS * merlin http://www.sph.umich.edu/csg/abecasis/Merlin/ * qtdt http://www.sph.umich.edu/csg/abecasis/QTDT/ * Rare-Metal http://genome.sph.umich.edu/wiki/Rare-Metal * Rare-Metal-Worker http://genome.sph.umich.edu/wiki/Rare-Metal-Worker * JAG http://ctglab.nl/software/ * Jamp http://ctglab.nl/software/ * tates http://ctglab.nl/software/ * sgene http://ibg.colorado.edu/dokuwiki/lib/exe/fetch.php?media=workshop:2009:sgene.exe * KGG http://bioinfo.hku.hk/kggweb/ * KGGSeq http://statgenpro.psychiatry.hku.hk/kggseq/ * pspp http://www.gnu.org/software/pspp/ * PennCNV http://www.openbioinformatics.org/penncnv/ * xhmm http://atgu.mgh.harvard.edu/xhmm/ * eigenstrat http://genepath.med.harvard.edu/~reich/Software.htm * BayeScan http://cmpg.unibe.ch/software/bayescan/ * R http://cran.us.r-project.org/ * OpenMx http://openmx.psyc.virginia.edu/ * R-MASS http://cran.r-project.org/web/packages/MASS/index.html * R-psych http://cran.r-project.org/web/packages/psych/ * R-car http://cran.r-project.org/web/packages/car/ * R-sem http://cran.r-project.org/web/packages/sem/ * Rplinkseq http://atgu.mgh.harvard.edu/plinkseq/r-intro.shtml * Rstudio http://www.rstudio.com/