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This shows you the differences between two versions of the page.

--- workshop:2017:software [2017/03/06 15:42] – created lessem
+++ workshop:2017:software [2017/03/09 19:19] (current) – lessem
@@ Line 1: / Line 1: @@
 ====== Software used at the workshop ======
+  - [[https://cran.r-project.org/|R]]
+     - [[https://www.rstudio.com/|RStudio]]
+     - [[https://cran.r-project.org/web/packages/gee/index.html|Gee]]
+     - [[http://www.uni-regensburg.de/medizin/epidemiologie-praeventivmedizin/genetische-epidemiologie/software/index.html|EasyQC]]
+  - [[https://www.cog-genomics.org/plink2|plink]]
+     - [[http://zzz.bwh.harvard.edu/plink/|plink (the old show)]]
+  - [[https://wp.sanger.ac.uk/barrettgroup/tag/evoker/|Evoker]]
+  - [[https://www.broadinstitute.org/haploview/haploview|Haploview]]
+  - [[http://genome.sph.umich.edu/wiki/Minimac|minimac]]
+  - [[http://genome.sph.umich.edu/wiki/RAREMETALWORKER|RAREMETALWORKER]]
+  - [[http://genome.sph.umich.edu/wiki/Metal|Metal]]
+  - [[https://www.hsph.harvard.edu/alkes-price/eigensoft-frequently-asked-questions/|Eigensoft suite]]
+  - [[http://cnsgenomics.com/software/gcta/|gcta]]
+  - [[http://fuma.ctglab.nl/|Functional Mapping and Annotation of Genome-Wide Association Studies]]
+  - [[https://ctg.cncr.nl/software/magma|MAGMA]]
+  - [[http://uswest.ensembl.org/info/docs/tools/vep/index.html|Variant Effect Predictor]]
+  - [[http://exac.broadinstitute.org/|ExAC Browser]]
+  - [[http://www.ensembl.org/Homo_sapiens/|Ensembl]]
+  - [[https://hail.is/|Hail]]