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--- workshop:2015:cdrom [2015/03/09 18:05] – lessem
+++ workshop:2015:cdrom [2015/03/30 19:47] (current) – [Software] lessem
@@ Line 1: / Line 1: @@
 ===== Software ======
 Links to software used at the course.
+  * [[https://www.cog-genomics.org/plink2/|plink version 1.9x]] or [[http://pngu.mgh.harvard.edu/~purcell/plink/|the old version 1.07]]
+  * [[http://csg.sph.umich.edu/abecasis/MACH/|mach]]
+  * [[http://csg.sph.umich.edu/abecasis/Metal/index.html|Metal]]
+  * [[http://csg.sph.umich.edu/locuszoom/|LocusZoom]]
+  * [[http://ctglab.nl/software/jag|JAG]]
+  * [[http://ctglab.nl/software/jamp|JAMP]]
+  * [[http://ctglab.nl/software/tates|TATES]]
+  * [[https://atgu.mgh.harvard.edu/plinkseq/index.shtml|PSEQ]]
+  * [[http://genome.sph.umich.edu/wiki/Minimac|Minimac]]
+  * [[http://statgenpro.psychiatry.hku.hk/limx/kgg/|KGG]]
+  * [[http://statgenpro.psychiatry.hku.hk/limx/kggseq/|KGGSeq]]
+  * [[http://openmx.psyc.virginia.edu/|OpenMx]]
+  * [[http://www.openbioinformatics.org/annovar/|ANNOVAR]]
+  * [[http://www.complextraitgenomics.com/software/gcta/|GCTA]]
+  * [[http://ctglab.nl/software/magma|MAGMA]]
 ===== Faculty Files =====
  These are the files the faculty used during the course. Both slides from presentations and examples from practicals are included. Completion of the practicals will require obtaining the appropriate software.
@@ Line 9: / Line 24: @@
   * [[http://ibg.colorado.edu/cdrom2015/beata/|Beata St. Pourcain]]
   * [[http://ibg.colorado.edu/cdrom2015/boomsma/|Dorret Boomsma]]
+  * [[http://ibg.colorado.edu/cdrom2015/de Leeuw/|Christiaan de Leeuw]]
   * [[http://ibg.colorado.edu/cdrom2015/eaves/|Lindon Eaves]]
   * [[http://ibg.colorado.edu/cdrom2015/evans/|David Evans]]
@@ Line 17: / Line 33: @@
   * [[http://ibg.colorado.edu/cdrom2015/kirkpatrick/|Rob Kirkpatrick]]
   * [[http://ibg.colorado.edu/cdrom2015/lek/|Monkol Lek]]
-  * [[http://ibg.colorado.edu/cdrom2015/maes/|Hermine Maes]]
+  * [[http://ibg.colorado.edu/cdrom2015/li/|Miaoxin Li]]
   * [[http://ibg.colorado.edu/cdrom2015/martin/|Nick Martin]]
   * [[http://ibg.colorado.edu/cdrom2015/medland/|Sarah Medland]]
@@ Line 27: / Line 43: @@
   * [[http://ibg.colorado.edu/cdrom2015/sunyaev/|Shamil Sunyaev]]
   * [[http://ibg.colorado.edu/cdrom2015/tang/|Clara Tang]]
+[[http://ibg.colorado.edu/cdrom2015/workshop2015.zip|Omnibus zip file]] containing all of the faculty files (573 megabytes).