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workshop:2011:schedule [2010/10/06 18:01] – lessemworkshop:2011:schedule [2011/03/10 23:47] (current) – lessem
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 The Workshop schedule is constantly changing, even during the course.  Updates are made to fine tune content to the students' needs. The Workshop schedule is constantly changing, even during the course.  Updates are made to fine tune content to the students' needs.
  
-The current schedule is very preliminary and represents general topics expected to be covered, but does not contain details on exact sessions, practicals, or lecturers. +The current schedule is preliminary and represents topics expected to be covered with details of the expected lecturers and practicals.
 ===== Schedule ===== ===== Schedule =====
 +
 +===Sunday, March 6, 2011===
 +^Time ^Topic ^Lecturers|
 +^16:00-18:00 |  Reception in the Boulder Creek Living Room  ||
  
 ===Monday, March 7, 2011=== ===Monday, March 7, 2011===
 //Linkage// //Linkage//
 ^Time ^Topic ^Lecturers| ^Time ^Topic ^Lecturers|
 +^ 8:00-8:50 | Optional Review: Linux/Unix Operating System | Sarah Medland|
 ^ 9:00-10:15 | Overview:  Historical context and current challenges | Nick Martin| ^ 9:00-10:15 | Overview:  Historical context and current challenges | Nick Martin|
 ^10:15-10:30 | Introduction to computer system | Jeff Lessem | ^10:15-10:30 | Introduction to computer system | Jeff Lessem |
 ^10:30-11:00 |  Coffee break  || ^10:30-11:00 |  Coffee break  ||
-^ 11:00-12:30 | Introduction to genetics, statistics, and R | John Rice, Pak Sham, Matt Keller|+^ 11:00-12:30 | Introduction to genetics and statistics | John Rice, Pak Sham |
 ^12:30-13:30 |  Lunch  || ^12:30-13:30 |  Lunch  ||
 ^13:30-15:00 | Linkage: Biometrical model and priciples | Manuel Ferreira, David Evans, Stacey Cherny| ^13:30-15:00 | Linkage: Biometrical model and priciples | Manuel Ferreira, David Evans, Stacey Cherny|
 ^15:00-15:30 |  Coffee break  || ^15:00-15:30 |  Coffee break  ||
-^15:30-17:00 | Linkage: IBD estimation, Merlin, Merlin-regress | Manuel Ferreira, David Evans, Stacey Cherny|+^15:30-17:00 | Linkage: IBD estimation, Merlin | David Evans, Manuel Ferreira, Stacey Cherny| 
 +^17:30-19:00 |  Reception in the Boulder Creek Living Room  ||
  
 === Tuesday, March 8, 2011 === === Tuesday, March 8, 2011 ===
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 ^ 9:00-10:30 | GWAS: Introduction & Data Management Practical| Jeff Barrett, Shaun Purcell, Meike Bartels | ^ 9:00-10:30 | GWAS: Introduction & Data Management Practical| Jeff Barrett, Shaun Purcell, Meike Bartels |
 ^ 10:30-11:00 |  Coffee break  || ^ 10:30-11:00 |  Coffee break  ||
-^ 11:00-12:30 | GWAS: Association Tests & Stratification | David Evans, Matt Keller|+^ 11:00-12:30 | GWAS: Association Tests & Stratification | David Evans, Jeff Barrett|
 ^12:30-13:30 |  Lunch  || ^12:30-13:30 |  Lunch  ||
-^13:30-15:30 | GWAS: Haplotype Analysis & Imputation | Jeff Barrett, Sarah Medland, Goncalo Abecasis|+^13:30-15:30 | GWAS: Haplotype Analysis & Imputation | Jeff Barrett, Sarah Medland|
 ^15:00-15:30 |  Coffee break  || ^15:00-15:30 |  Coffee break  ||
 ^15:30-17:00 | GWAS: Power & Meta-analysis|Ben Neale, Pak Sham | ^15:30-17:00 | GWAS: Power & Meta-analysis|Ben Neale, Pak Sham |
 +^17:30-19:00 |  Reception in the Boulder Creek Living Room  ||
  
 === Wednesday, March 9, 2011 === === Wednesday, March 9, 2011 ===
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 //Sequencing// //Sequencing//
 ^Time ^Topic ^Lecturers| ^Time ^Topic ^Lecturers|
-^ 8:00-9:00 | Optional Review: R | Sarah Medland| +^ 8:00-9:00 | Optional Review: Family based analyses| Sarah Medland| 
-^ 9:00-10:30 | GWAS: CNV Analysis | Manuel Ferreira |+^ 9:00-10:30 | GWAS: CNV Analysis | Manuel Ferreira, Clara Tang |
 ^ 10:30-11:00 |  Coffee break  || ^ 10:30-11:00 |  Coffee break  ||
-^ 11:00-12:30 | GWAS: Pathways/Networks/Multilocus analyses| Danielle Posthuma, Dorrett Boomsma|+^ 11:00-12:30 | GWAS: Pathways/Networks/Multilocus analyses| Danielle Posthuma, Sarah Medland, Pak Sham|
 ^12:30-13:30 |  Lunch  || ^12:30-13:30 |  Lunch  ||
-^13:30-14:30 | Introduction to sequence data generation | | +^13:30-15:00 | Introduction to sequence data generation | Kai Ye, Ben Neale |
-^14:30-15:00 | Mapping and alignment practical and variant calling| |+
 ^15:00-15:30 |  Coffee break  || ^15:00-15:30 |  Coffee break  ||
-^15:30-17:00 | Mapping and alignment practical and variant calling | |+^15:30-17:00 | Mapping and alignment practical and variant calling | Hyun Min Kang, Kai Ye, Goncalo Abecasis |
  
 === Thursday, March 10, 2011 === === Thursday, March 10, 2011 ===
 //Sequencing// //Sequencing//
 ^Time ^Topic ^Lecturers| ^Time ^Topic ^Lecturers|
-^ 8:00-9:00 | Optional Review: R | Sarah Medland| +^ 8:00-9:00 | Optional Review: GCTA | Sarah Medland| 
-^ 9:00-10:30 | QC of variant calls| |+^ 9:00-10:30 | Visualization and QC of variant calls| Hyun Min Kang, Goncalo Abecasis |
 ^ 10:30-11:00 |  Coffee break  || ^ 10:30-11:00 |  Coffee break  ||
-^ 11:00-12:00 | Rare variant testing approaches| | +^ 11:00-12:00 | Rare variant testing approaches| Ben Neale, Shaun Purcell | 
-^ 12:00-12:30 | PSEQ practical||+^12:00-12:30 | PSEQ practical| Shaun Purcell, Ben Neale |
 ^12:30-13:30 |  Lunch  || ^12:30-13:30 |  Lunch  ||
-^13:30-15:00 | PSEQ practical| |+^13:30-15:00 | contintued PSEQ practical| Shaun Purcell, Ben Neale |
 ^15:00-15:30 |  Coffee break  || ^15:00-15:30 |  Coffee break  ||
-^15:30-17:00 | 1,000 genomes, bioinformatics, annotation| |+^15:30-17:00 | 1,000 genomes, bioinformatics, annotation| Goncalo Abecasis, Hyun Min Kang |
  
 === Friday, March 11, 2011 === === Friday, March 11, 2011 ===
 //Phenotypic Modelling// //Phenotypic Modelling//
 ^Time ^Topic ^Lecturers| ^Time ^Topic ^Lecturers|
-^ 8:00-9:00 | Optional Review: OpenMx | Sarah Medland, Matt Keller| +^ 9:00-9:45 | Introduction Phenomics | Nick Martin, Mike Neale | 
-^ 9:00-10:30 | Modeling Means, Stratification | Matt Keller Hermine Maes |+^ 9:45-10:30 | Phenotypic Factor Modeling | Hermine Maes, Meike Bartels |
 ^ 10:30-11:00 |  Coffee break  || ^ 10:30-11:00 |  Coffee break  ||
-^11:00-12:30 | Phenotypic Modeling | Sarah Medland, Mike Neale |+^11:00-11:30 | Multivariate Association | Dorret Boomsma, Meike Bartels| 
 +^11:30-12:30 | Multivariate Association Practical | Meike Bartels, Hermine Maes |
 ^12:30-13:30 |  Lunch   || ^12:30-13:30 |  Lunch   ||
-^13:30-15:00 | Multivariate/Longitudinal Analyses | Meika Bartels, Dorrett Boomsma |+^13:30-14:00 | GWAS with Family Data | Sarah Medland | 
 +^14:00-15:00 | Multivariate Categorical | Mike Neale, Sarah Medland |
 ^15:00-15:30 |  Coffee break  || ^15:00-15:30 |  Coffee break  ||
 ^15:30-17:00 | Wrap up | Lindon Eaves | ^15:30-17:00 | Wrap up | Lindon Eaves |
  
workshop/2011/schedule.1286388118.txt.gz · Last modified: by lessem