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This shows you the differences between two versions of the page.

--- workshop:2011:schedule [2010/09/27 19:03] – lessem
+++ workshop:2011:schedule [2011/03/10 23:47] (current) – lessem
@@ Line 2: / Line 2: @@
 The Workshop schedule is constantly changing, even during the course.  Updates are made to fine tune content to the students' needs.
-The current schedule is very preliminary and represents general topics expected to be covered, but does not contain details on exact sessions, practicals, or lecturers.
+The current schedule is preliminary and represents topics expected to be covered with details of the expected lecturers and practicals.
 ===== Schedule =====
+===Sunday, March 6, 2011===
+^Time ^Topic ^Lecturers|
+^16:00-18:00 |  Reception in the Boulder Creek Living Room  ||
 ===Monday, March 7, 2011===
-//Linkage// Manuel Ferreira, David Evans
+//Linkage//
 ^Time ^Topic ^Lecturers|
-^ 9:00-10:30 | Introduction | Nick Martin|
+^ 8:00-8:50 | Optional Review: Linux/Unix Operating System | Sarah Medland|
+^ 9:00-10:15 | Overview:  Historical context and current challenges | Nick Martin|
+^10:15-10:30 | Introduction to computer system | Jeff Lessem |
 ^10:30-11:00 |  Coffee break  ||
-^ 11:00-12:30 | Intro to genetics, statistics, and R | John Rice, Pak Sham, Matt Keller|
+^ 11:00-12:30 | Introduction to genetics and statistics | John Rice, Pak Sham |
 ^12:30-13:30 |  Lunch  ||
-^13:30-15:00 | Linkage | Manuel Ferreira, David Evans|
+^13:30-15:00 | Linkage: Biometrical model and priciples | Manuel Ferreira, David Evans, Stacey Cherny|
 ^15:00-15:30 |  Coffee break  ||
-^15:30-17:00 | Linkage | Manuel Ferreira, David Evans|
+^15:30-17:00 | Linkage: IBD estimation, Merlin | David Evans, Manuel Ferreira, Stacey Cherny|
+^17:30-19:00 |  Reception in the Boulder Creek Living Room  ||
 === Tuesday, March 8, 2011 ===
-//GWAS// Shaun Purcell, Jeff Barrett
+//GWAS//
 ^Time ^Topic ^Lecturers|
 ^ 8:00-9:00 | Optional Review: R | Sarah Medland|
-^ 9:00-10:30 | GWAS: Introduction & Data Management | |
+^ 9:00-10:30 | GWAS: Introduction & Data Management Practical| Jeff Barrett, Shaun Purcell, Meike Bartels |
 ^ 10:30-11:00 |  Coffee break  ||
-^ 11:00-12:30 | GWAS: Association Tests & Stratification | |
+^ 11:00-12:30 | GWAS: Association Tests & Stratification | David Evans, Jeff Barrett|
 ^12:30-13:30 |  Lunch  ||
-^13:30-15:30 | GWAS: Haplotype Analysis & Imputation | |
+^13:30-15:30 | GWAS: Haplotype Analysis & Imputation | Jeff Barrett, Sarah Medland|
 ^15:00-15:30 |  Coffee break  ||
-^15:30-17:00 | GWAS: Power, Meta-analysis & Mega-analysis| |
+^15:30-17:00 | GWAS: Power & Meta-analysis|Ben Neale, Pak Sham |
+^17:30-19:00 |  Reception in the Boulder Creek Living Room  ||
 === Wednesday, March 9, 2011 ===
-//GWAS// Shaun Purcell, Jeff Barrett\\
+//GWAS//\\
-//Sequencing// Ben Neale, Goncalo Abecasis
+//Sequencing//
 ^Time ^Topic ^Lecturers|
-^ 8:00-9:00 | Optional Review: R | Sarah Medland|
+^ 8:00-9:00 | Optional Review: Family based analyses| Sarah Medland|
-^ 9:00-10:30 | GWAS: CNV Analysis | |
+^ 9:00-10:30 | GWAS: CNV Analysis | Manuel Ferreira, Clara Tang |
 ^ 10:30-11:00 |  Coffee break  ||
-^ 11:00-12:30 | GWAS: Genes/Networks/Total Polygenic| Danielle Posthuma|
+^ 11:00-12:30 | GWAS: Pathways/Networks/Multilocus analyses| Danielle Posthuma, Sarah Medland, Pak Sham|
 ^12:30-13:30 |  Lunch  ||
-^13:30-15:00 | Sequencing | |
+^13:30-15:00 | Introduction to sequence data generation | Kai Ye, Ben Neale |
 ^15:00-15:30 |  Coffee break  ||
-^15:30-17:00 | Sequencing | |
+^15:30-17:00 | Mapping and alignment practical and variant calling | Hyun Min Kang, Kai Ye, Goncalo Abecasis |
 === Thursday, March 10, 2011 ===
-//Sequencing// Ben Neale, Goncalo Abecasis
+//Sequencing//
 ^Time ^Topic ^Lecturers|
-^ 8:00-9:00 | Optional Review: R | Sarah Medland|
+^ 8:00-9:00 | Optional Review: GCTA | Sarah Medland|
-^ 9:00-10:30 | Sequencing | |
+^ 9:00-10:30 | Visualization and QC of variant calls| Hyun Min Kang, Goncalo Abecasis |
 ^ 10:30-11:00 |  Coffee break  ||
-^ 11:00-12:30 | Sequencing | |
+^ 11:00-12:00 | Rare variant testing approaches| Ben Neale, Shaun Purcell |
+^12:00-12:30 | PSEQ practical| Shaun Purcell, Ben Neale |
 ^12:30-13:30 |  Lunch  ||
-^13:30-15:00 | Sequencing | |
+^13:30-15:00 | contintued PSEQ practical| Shaun Purcell, Ben Neale |
 ^15:00-15:30 |  Coffee break  ||
-^15:30-17:00 | Sequencing | |
+^15:30-17:00 | 1,000 genomes, bioinformatics, annotation| Goncalo Abecasis, Hyun Min Kang |
 === Friday, March 11, 2011 ===
-//Phenotypic Modelling// Mike Neale
+//Phenotypic Modelling//
 ^Time ^Topic ^Lecturers|
-^ 8:00-9:00 | Optional Review: OpenMx | Sarah Medland, Matt Keller|
+^ 9:00-9:45 | Introduction Phenomics | Nick Martin, Mike Neale |
-^ 9:00-10:30 | Modeling Means & Population Stratification | Matt Keller Hermine Maes |
+^ 9:45-10:30 | Phenotypic Factor Modeling | Hermine Maes, Meike Bartels |
 ^ 10:30-11:00 |  Coffee break  ||
-^11:00-12:30 | Phenotypic Modeling | Sarah Medland, Mike Neale |
+^11:00-11:30 | Multivariate Association | Dorret Boomsma, Meike Bartels|
+^11:30-12:30 | Multivariate Association Practical | Meike Bartels, Hermine Maes |
 ^12:30-13:30 |  Lunch   ||
-^13:30-15:00 | Multivariate/Longitudinal Analyses | Meika Bartels, Dorrett Boomsma |
+^13:30-14:00 | GWAS with Family Data | Sarah Medland |
+^14:00-15:00 | Multivariate Categorical | Mike Neale, Sarah Medland |
 ^15:00-15:30 |  Coffee break  ||
 ^15:30-17:00 | Wrap up | Lindon Eaves |