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homework_7_functional_annotation [2015/12/03 21:21] – /* Code for Homework */ scotthomework_7_functional_annotation [2015/12/03 21:22] (current) – /* Code for Homework */ scott
Line 38: Line 38:
      -o chrALL.filtered.PASS.beagled.HG00096.rsID.anno.vcf.gz \      -o chrALL.filtered.PASS.beagled.HG00096.rsID.anno.vcf.gz \
      -r /Users/scvr9332/reference_data/gotcloud.ref/hs37d5.fa \      -r /Users/scvr9332/reference_data/gotcloud.ref/hs37d5.fa \
-     -g /Users/scvr9332/reference_data/anno/refFlat.gencode.v11.gz \+     -g /Users/scvr9332/reference_data/anno/refFlat_hg19.txt.gz \
      -p /Users/scvr9332/reference_data/anno/priority.txt \      -p /Users/scvr9332/reference_data/anno/priority.txt \
      -c /Users/scvr9332/reference_data/anno/codon.txt      -c /Users/scvr9332/reference_data/anno/codon.txt
homework_7_functional_annotation.1449177705.txt.gz · Last modified: by scott