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homework_7_functional_annotation [2015/12/03 21:21] – /* Notes */ scotthomework_7_functional_annotation [2015/12/03 21:22] (current) – /* Code for Homework */ scott
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 # Some modules you'll need # Some modules you'll need
 module load tabix_0.2.6 module load tabix_0.2.6
-module load anno+module load anno_1.0
  
 # I encourage you to annotate your own genome, but for purposes of this  # I encourage you to annotate your own genome, but for purposes of this 
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      -o chrALL.filtered.PASS.beagled.HG00096.rsID.anno.vcf.gz \      -o chrALL.filtered.PASS.beagled.HG00096.rsID.anno.vcf.gz \
      -r /Users/scvr9332/reference_data/gotcloud.ref/hs37d5.fa \      -r /Users/scvr9332/reference_data/gotcloud.ref/hs37d5.fa \
-     -g /Users/scvr9332/reference_data/anno/refFlat.gencode.v11.gz \+     -g /Users/scvr9332/reference_data/anno/refFlat_hg19.txt.gz \
      -p /Users/scvr9332/reference_data/anno/priority.txt \      -p /Users/scvr9332/reference_data/anno/priority.txt \
      -c /Users/scvr9332/reference_data/anno/codon.txt      -c /Users/scvr9332/reference_data/anno/codon.txt
homework_7_functional_annotation.1449177697.txt.gz · Last modified: by scott