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homework_6_ancestry [2015/11/16 00:41] – scotthomework_6_ancestry [2015/11/16 17:18] (current) – scott
Line 40: Line 40:
 module load apigenome_0.0.2 module load apigenome_0.0.2
 module load plink_latest module load plink_latest
 +module load tabix_0.2.6
  
  
Line 271: Line 272:
  
 ### 'Self-reported' ancestry of 1000g participants ### 'Self-reported' ancestry of 1000g participants
-kg_sf <- read.table('/Users/scvr9332/20130502.sequence.index', header=T, sep='\t', fill=T, stringsAsFactors=F)+kg_sf <- read.table('/Users/scvr9332/PCA/20130502.sequence.index', header=T, sep='\t', fill=T, stringsAsFactors=F)
  
 sample_ids <- unique(data.frame(IID=kg_sf$SAMPLE_NAME, POPULATION=kg_sf$POPULATION, stringsAsFactors=F)) sample_ids <- unique(data.frame(IID=kg_sf$SAMPLE_NAME, POPULATION=kg_sf$POPULATION, stringsAsFactors=F))
homework_6_ancestry.1447634468.txt.gz · Last modified: by scott