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keller_and_evans_lab:gscan [2016/05/02 07:43] scott /* Phenotype definitions and analysis plan */ |
keller_and_evans_lab:gscan [2016/09/12 15:00] scott |
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Regular conference calls are held and minutes are [[https:// | Regular conference calls are held and minutes are [[https:// | ||
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+ | Other meeting materials from CO internal meetings are here: | ||
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+ | [[gscan_6: | ||
======= GSCAN Exome Chip ======= | ======= GSCAN Exome Chip ======= | ||
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+ | ====== Phenotype definitions and analysis plan ====== | ||
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+ | {{file_gscan_exome_chip_analysis_plan-v2_2.pdfExome chip analysis plan and phenotype definitions.}} | ||
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====== Phenotype definitions and analysis plan ====== | ====== Phenotype definitions and analysis plan ====== | ||
- | {{file_gscan_gwas_analysis_plan-v1_2.pdf}} | + | The analysis plan and phenotypes are described in files linked below (makes it easier to keep track of versioning!). Coding of phenotypes is described in the aptly-named " |
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+ | {{file_gscan_gwas_analysis_plan-v1_3.docxClick here to find the GSCAN GWAS analysis plan.}} | ||
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+ | {{file_gscan_gwas_phenotype_definitions-2-24-2016.pdfClick here to find the GSCAN GWAS phenotype definitions.}} | ||
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On RC the organization is similar. Everything is located within the folder / | On RC the organization is similar. Everything is located within the folder / | ||
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+ | ====== [[gscan_db_ga_p]] & UK Biobank ====== | ||
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+ | Studies included from dbGaP, and the process by which phenotypes and genotypes were constructed and merged is outlined on the [[gscan_db_ga_p]] page. | ||
======= GSCAN Sequencing ======= | ======= GSCAN Sequencing ======= | ||
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+ | ====== TOPMed ====== | ||
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+ | ===== Phenotype definitions and analysis plan ===== | ||
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+ | Phenotype definitions and analysis plans for the TOPMed studies are {{file_topmed_smoking_analysis_plan-v0_2.docxcontained in this document}}. | ||
The list of dbGaP studies in TOPMed is in [[https:// | The list of dbGaP studies in TOPMed is in [[https:// | ||
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