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--- keller_and_evans_lab:cu_research_computing [2016/12/12 11:55]
matthew_keller /* Getting information on jobs */
+++ keller_and_evans_lab:cu_research_computing [2019/11/08 12:06]
borderr [Overview of best practices]
@@ Line 1: / Line 1: @@
-General documentation for using RC is [[[https://www.rc.colorado.edu/support|on their website]]]. This document will mostly cover specific instructions for using it in the Vrieze and Keller labs.
+This document will mostly cover specific instructions for using RC in the Vrieze and Keller labs. We will try to update this, but RC is a bit of a moving target, so some of what is written below may now be outdated.
-======= Logging in =======
+======= Getting started =======
+General documentation for using RC is [[[https://curc.readthedocs.io/en/latest/|on their website]]]. We recommend that ALL new users first read these overviews on that webpage. In particular: \\
+Logging In <which you've already done>
+Duo 2-factor Authentication <which you've already done>
+Allocations
+Node Types
+Filesystems
+The modules system
+The PetaLibrary
+Running applications with Jobs
+Batch Jobs and Job Scripting
+Interactive Jobs
+Useful Slurm commands
+Job Resource Information
+squeue status and reason codes
+Containerization on Summit
+======= Overview of best practices =======
+[[https://docs.google.com/presentation/d/1yQToDgohYZIzwu9NL0Z5ORpmN-9qeY3cpT7RDusEg-w/edit?usp=sharing|Richard Border's slides]] from October 2019 (might be out of date)
+======= Logging in =======
 Put these settings in your ''~/.ssh/config'' file so you only have to enter your OTP once per session, instead of for every ssh connection you make
@@ Line 25: / Line 50: @@
 These settings should work from Mac and Linux. I'm not sure how to do the equivalent from Windows with Putty. On a Mac, those settings will cause X11 to start. If you don't want that to happen, then remove the ''ForwardX11 yes'' line.
+For those with access to summit (ONLY!), here are the steps to using it:
+  #From a login node:
+  ssh -YC <uname>@shas07{01-15}
+  #In your shell script:
+  No need to include -A UCB00000442
+   --partition=shas
+  #To run R:
+  ml load R
+  ml load gcc
+  R

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