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homework_7_functional_annotation [2015/12/02 15:43]
scott Created page with "==== Notes ==== ==== Code for Homework ==== <syntaxhighlight lang="bash"> # PSYC 7102 -- Statistical Genetics # Homework #7: Functional Annotation # Due: December 10th # Ove..."
homework_7_functional_annotation [2015/12/03 14:21]
scott /* Notes */
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 module load tabix_0.2.6 module load tabix_0.2.6
 module load anno module load anno
-module load plink_latest 
  
 # I encourage you to annotate your own genome, but for purposes of this  # I encourage you to annotate your own genome, but for purposes of this 
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 ### The following command tells me at how many sites this individual ### The following command tells me at how many sites this individual
 ### has a heterozygous stop gain allele: ### has a heterozygous stop gain allele:
-zgrep '\s0|1:\|\s1|0:' stop_gains.vcf | wc -l+zgrep '\s0|1:\|\s1|0:' stop_gains.vcf.gz | wc -l
  
 ###----------------------------------### ###----------------------------------###
homework_7_functional_annotation.txt ยท Last modified: 2015/12/03 14:22 by scott