******************************************************************* * Genome-wide Complex Trait Analysis (GCTA) * version v1.95.1 Linux * Built at Feb 2 2026 16:51:42, by GCC 8.4 * (C) 2010-present, Yang Lab, Westlake University * Please report bugs to Jian Yang ******************************************************************* Analysis started at 00:06:15 MDT on Tue May 19 2026. Hostname: ip-10-0-200-228 Accepted options: --bfile mydata --make-grm-bin --out mydata_allSNPs Note: the program will be running on 2 threads. Reading PLINK FAM file from [mydata.fam]. 6000 individuals to be included from [mydata.fam]. Reading PLINK BIM file from [mydata.bim]. 12000 SNPs to be included from [mydata.bim]. Reading PLINK BED file from [mydata.bed] in SNP-major format ... Genotype data for 6000 individuals and 12000 SNPs to be included from [mydata.bed]. Calculating allele frequencies ... Recoding genotypes (individual major mode) ... Calculating the genetic relationship matrix (GRM) ... (Note: default speed-optimized mode, may use huge RAM) Summary of the GRM: Mean of diagonals = 0.999984 Variance of diagonals = 0.000436479 Mean of off-diagonals = -0.000166693 Variance of off-diagonals = 0.000166322 GRM of 6000 individuals has been saved in the file [mydata_allSNPs.grm.bin] (in binary format). Number of SNPs to calculate the genetic relationship between each pair of individuals has been saved in the file [mydata_allSNPs.grm.N.bin] (in binary format). IDs for the GRM file [mydata_allSNPs.grm.bin] have been saved in the file [mydata_allSNPs.grm.id]. Analysis finished at 00:06:26 MDT on Tue May 19 2026 Overall computational time: 11.78 sec.