The munging of 1 summary statistics started at 2025-03-05 09:04:13.187981
Reading in reference file
Reading summary statistics for EUR/BMI_GWAS_for_LDSC.txt. Please note that this step usually takes a few minutes due to the size of summary statistic files.
All files loaded into R!



Munging file: EUR/BMI_GWAS_for_LDSC.txt
Interpreting the SNP column as the SNP column.
Interpreting the A1 column as the A1 column.
Interpreting the A2 column as the A2 column.
Interpreting the BETA column as the effect column.
Interpreting the P column as the P column.
Interpreting the N column as the N column.
Interpreting the MAF column as the MAF column.
Interpreting the SE column as the SE column.
Merging file:EUR/BMI_GWAS_for_LDSC.txt with the reference file:EUR/eur_w_ld_chr/w_hm3.snplist
29991 rows present in the full EUR/BMI_GWAS_for_LDSC.txt summary statistics file.
15608 rows were removed from the EUR/BMI_GWAS_for_LDSC.txt summary statistics file as the rs-ids for these rows were not present in the reference file.
No INFO column, cannot filter on INFO, which may influence results
1 rows were removed from the EUR/BMI_GWAS_for_LDSC.txt summary statistics file due to missing MAF information or MAFs below the designated threshold of0.01
14382SNPs are left in the summary statistics file EUR/BMI_GWAS_for_LDSC.txt after QC.
I am done munging file: EUR/BMI_GWAS_for_LDSC.txt
The file is saved as EUR/munged_BMI_GWAS_chr22_for_LDSC.sumstats.gz in the current working directory.
     
Munging was completed at 2025-03-05 09:04:14.969291
The munging of all files took 0 minutes and 1.78130984306335 seconds
Please check the .log file(s) to ensure that all columns were interpreted correctly and no warnings were issued for any of the summary statistics files