Reading ReferenceID 0

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SUMMARY STATISTICS OF THE READS
Total number of reads: 7006
Total number of paired-end reads: 6996
Total number of properly paired reads: 6562
Total number of unmapped reads : 201
Total number of reverse strand mapped reads: 3521
Total number of QC-failed reads : 0
Size of singleKeyMap (must be zero) : 0
Size of pairedKeyMap (must be zero) : 0
Total number of missing mates: 0
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Sorting the indices of 170 duplicated records

Writing /home/marykt/gotcloudTutorial/tmp/alignment.dedup/HG00100.dedup.bam
Successfully marked 42 unpaired and 64 paired duplicate reads

Dedup complete!