Reading ReferenceID 0

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SUMMARY STATISTICS OF THE READS
Total number of reads: 15233
Total number of paired-end reads: 15164
Total number of properly paired reads: 14986
Total number of unmapped reads : 52
Total number of reverse strand mapped reads: 7597
Total number of QC-failed reads : 0
Size of singleKeyMap (must be zero) : 0
Size of pairedKeyMap (must be zero) : 0
Total number of missing mates: 0
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Sorting the indices of 211 duplicated records

Writing /home/marykt/gotcloudTutorial/tmp/alignment.dedup/HG00096.dedup.bam
Successfully marked 11 unpaired and 100 paired duplicate reads

Dedup complete!