--buildver hg18

--v-assoc-file  examples/complex.disease.v.assoc.hg18.out

--excel
--out kggseqtest3.cd

--min-obsa 10  ##qc
--min-obsu 10  ##qc

--filter-model association  # case-unique, control-unique, association or no
--p-value-cutoff 0.1 #only effective for 'association' filter-model
--db-gene refgene \
--gene-feature-in 0,1,2,3,4,5,6,7,8,9,10,11,12,13,14
--db-score dbnsfp

--genome-anot 
--candi-list HLA-DPA1,HLA-DPB1
--ppi-anno string
--ppi-depth 1
--pathway-anno cura
--pubmed-mesh Crohn's+disease,Inflammatory+bowel+disease

--qqplot #only effective for 'association' filter-model