mkdir vegas
cd vegas
cp /home/sarah/vegas/c16.in ./
cp /home/sarah/vegas/top50.in ./
cp /home/sarah/vegas/Liu_AJHG_July2010_139-145.pdf ./
cp /home/sarah/vegas/VEGAS-readme.pdf ./
vegas c16.in -out c16.out -pop /usr/local/share/hapmapCEU -genelist top20