Reading ReferenceID 0

recordCount=100000 singleKeyMap=575 pairedKeyMap=890, dictSize=4044
Reading ReferenceID -1

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SUMMARY STATISTICS OF THE READS
Total number of reads: 115016
Total number of paired-end reads: 91830
Total number of properly paired reads: 75296
Total number of unmapped reads : 9420
Total number of reverse strand mapped reads: 56960
Total number of QC-failed reads : 0
Size of singleKeyMap (must be zero) : 0
Size of pairedKeyMap (must be zero) : 0
Total number of duplicate single-ended or mate-unpaired reads : 27165
Total number of duplicate paired-end reads (both ends mapped) : 17777
Total number of duplicated records: 62719
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Sorting the indices of 62719 duplicated records

Writing /home/hyun/wed/output/NA12878.exon-targetted.ILLUMINA.chr20.19986kb-20281kb.deduped.bam
recordCount=100000
Successfully marked 27165 unpaired and 17777 paired duplicate reads

SuperDeDuper complete!